NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10000833

Scaffold Ga0222712_10000833


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10000833 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39524
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (71.70%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043913Metagenome / Metatranscriptome155Y
F046914Metagenome150N
F083900Metagenome112N
F084136Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000083311F043913N/AMIRAANLMGEVEGGSQMAEVAFDVYDIATRIQKGDESGWRGDPTASLMFNPVIGRFEVWMIDAMGTPYVACSHHRADHSLIVKLIEGDWQKGKALHDDLMKKNKAVRDAHETVEKEKRLELADKLHWALVKDVGHLGGSTKRSISMNGKGK
Ga0222712_1000083312F083900AGGMNLLELRTAVKDRLAIRSDGSDNSLDGLITNDYVNTSIDDALNRVSMERDWWWLATTAPLSFDTTDGDAALPSDFMRANKLVINGSPVEPLPLDTFLDPNADMNAYGWLVYGNAVKITPIPTTTTTGTLYYFRSEPALSTQASPDTKSPLMPVVYQKCIVAYASHLCSARRQDEQRAALYLQEYGNFLKSMNDDNRATIQRRIKFSRAMSDAAWS
Ga0222712_100008332F046914N/AMRKAFDDADDIIEGIKGRRPTQAKSTRVVENMDEIVVISKGEAQQAKRASRAADIEEVRVKKVLEKEERRKSAEQLKVLGQDLLASGVASREILPKLAQSIIVDLGLRLVSNEWEIKSAEEATKVAKIWYDILRLESGQATTINENRTGNPEDRLSRLEELRSEAKARVEAGLRAIGDGNSG
Ga0222712_1000083326F084136AGGMEAVLVAVVTGVFAVLAILVEKGRKENKRDHGNVMDRLDLVSSEIRKDIRQVRYELSDHVNGPAHNTKPVVPAKIPLKKRPKAG

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