NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10000887

Scaffold Ga0222712_10000887


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10000887 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38400
Total Scaffold Genes78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (19.23%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003291Metagenome / Metatranscriptome495Y
F005349Metagenome / Metatranscriptome403Y
F014139Metagenome / Metatranscriptome265N
F024555Metagenome / Metatranscriptome205Y
F025032Metagenome203N
F036239Metagenome / Metatranscriptome170Y
F084236Metagenome / Metatranscriptome112Y
F087181Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000088724F014139N/AMGVLKVNWKKYLNSSNPTINKYLSDFGDSFITQTLQRITLAHQKKKSQIILIRFKQSDIVATIESKDYVLALEHLLQLCVNLEKYELCREIHTTINLIKSKRRMRVKSPPLVTSS
Ga0222712_1000088728F005349N/AMAYLVHKQLIPTDKSMGDPNWAKRQIWVLKLNANDTIDEFETIEEAQTKVGLLMNEDPSGRIYKVVQKNEDGTFSDI
Ga0222712_1000088737F025032N/AMISLKSTLEGESNVDKFTFKQRDAGGVRPSYQNTKLVKQGSTGDYVKYNVMVMGKFGGTIYYNKADKTMIASGGESNTTFPPKRFKSIKDAIDYVGGNSTRSYNTNIPLDGMDTSFGTARYV
Ga0222712_1000088742F036239N/AMKIKGWEKISGFTYKGYSIVNPIHNAGEEVYYATILNLNQVYKPKWDIELTATPVKGVITFRIKDNETQHLLAKSHLTKTNIDTLKKFREQYEMLVDDILEGVQSYTASKVTKNINGGTTGIVNQVQSAGTNVLYGSSSLSNRFTPAHLLQTIKDLQKQIDDYNKKL
Ga0222712_1000088744F087181N/AMSFGEIVFAMVISGIVGLWIYAYIVSDEVGRILWDNTAIGWIWREYFSKKKKAKQAPIPSFGHIPPPPAMPTSFNTSSLNVPHMNHTGKPLVIKNWDRLAGMATMVFGRRWIVVQAFYASSYEFTLQTGGMAKSVTFSIYGDMYDSHRVSVYCQGRTEIMDVDICKDPNRLLHEVTYTFNEKFR
Ga0222712_1000088746F024555GGTGGMNVVKIIEISNMLTIKNIEKLYKLLVGNWKVGKVVTLDSSYLIQLYKYNSMETMQVNIERTPIGEGDTALYELWFWEDNSGGAKPIRRLLRKCDFELGPLYVINNIENMMTLK
Ga0222712_1000088761F003291N/AMTTNQMNEKLVSVFNQDELAEIMTALAGYVNIKRKQGRSTGTTVQAFNKITDALLLSNYMNAEVIDTKPNSKAPMGSAAYKAYEAMYDSDVRAHS
Ga0222712_1000088776F084236AGGMLTIKNQYKLVAETIVVSKNGANEHWIVDDVAEMPGVYDIVVLRKLGIFDTIFRIIRINKEKNELGMYSVQIIQEGLVIDKDQIRLSNIQTTEGMLNELKTIMEFI
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