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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021963 Open in IMG/M |
| Scaffold ID | Ga0222712_10001152 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 33748 |
| Total Scaffold Genes | 54 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 42 (77.78%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.1516 | Long. (o) | -121.6883 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F050233 | Metagenome / Metatranscriptome | 145 | Y |
| F057212 | Metagenome | 136 | Y |
| F074591 | Metagenome / Metatranscriptome | 119 | Y |
| F086842 | Metagenome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222712_1000115230 | F050233 | GGTGG | MGLIELGQYAGALSAIALLAGMAIKWGIVKPIKAYIDQATYPISPTANGGKSLPDIAHTVNRIEASVKELDYRLNSIEELVTKPTRTRKTTA |
| Ga0222712_1000115240 | F086842 | AGGA | VNKTEIAKLLAIASAIDARLGAADESGFRAKVEGWSLALSETMDFEFACDAIGKHYKSATDALMPAHLNAMWTANRSRQHEIDNVRAIGSSPKSQGMPDDVRAKLVELGLKRP |
| Ga0222712_1000115243 | F074591 | AGG | MRNWNWTPRARFIGELLTAIGLVAAGWVLFVGTWFALGGN |
| Ga0222712_1000115254 | F057212 | AGAAGG | MTTIITTTGNNFCTLTADQGITSDLIHPDMPKIVQQDTWLIGVAGSARVCDQLQYSIEYPKPPVEVVKSGEWLRWLVTKVIPLIDDMIKDSEMDAEALLITHGKAFLVSENLSVLTANPYWAIGSGADLALGSLADRQYAPDWHKNHDLSALRAMESASMHDPNTRGGIDQFRSYATGKVIARANGIQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |