NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222712_10002825

Scaffold Ga0222712_10002825


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10002825 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19492
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (21.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004740Metagenome425Y
F087117Metagenome110N
F088772Metagenome109N
F100729Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000282512F004740N/AMRKGMATDNPFLGLDTGTLATLKTETIAAIRACLLNTSYSLNGKSVTRADLGRLNEMLGQIQAAIDDANGNTDTVTFISFNGN
Ga0222712_1000282517F088772AGGMSLLSFLASAAGGTILGGATQLLGSIVGEAKEWSASKRRIAEIAALKEKQIAIAEVEAFAKAVEGTSGSSYTPPAGASNWMHGLMTIAAFCTQMVRPCMVAGACAYIWTRPADQLAGLQPEILTVSFACVYFWLGVRHQLSRGK
Ga0222712_1000282521F100729N/AMNWKQLVDAQNRKTYVLPPGWDSREKVAEQLECSVENVRVLLGPALRSKTVEAQQFPVWDDISKKVVRVTAYRRRQTADDKRSR
Ga0222712_100028253F087117N/AVEAPNIRLNSTSKPEENAQSPAELLAKANVANITKKLKAGKTLTASERKALSEFEADKTGGAWVGGIKQLADELGLSRQALYDARKRFPDEAPRPDGRRENVEAWRAFCAEKLIGRDVATKTLSELKAELMREQIELARAKNRRESGDVIDREVVEEMLGVLAQKLDLLLRLKLEVELGPRVAGKSAAEANVEGGAILEEIREVVAGNIANFQAEALAEQRDAE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.