NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10017875

Scaffold Ga0222712_10017875


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10017875 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6026
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007164Metagenome / Metatranscriptome356Y
F014488Metagenome262Y
F027777Metagenome / Metatranscriptome193N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100178751F027777N/APTFWHEEPANKKRPGETTDEWIVRLFGPIPDTEFDSRNDFRSLKLPETKKENAEGFGVFDYKEKE
Ga0222712_1001787514F014488GAGMKHQGQDPADSILASYTPDMAEAIDTLEDRVKERLAQMKAMNPTIDLDQLAKITALVVEQTIKCEGDSQMLRNRRDDTLDEALLALATNRSPDSLTAIAKRYINPTTGKPYTRAAISARLSELTQRTGLVLRIQRSERVRQIYKERALRVHKKRREECPKWNKDAWTKGIKSRKAK
Ga0222712_1001787516F007164AGGAGMSEKQIGIELKKTAALLEKAKAQAVQTMAETISLAADCGDILLSARKEELDIDAILEVAEINGEMARRLERVAKARPSLQAPAPGQLKQLALWAGILPDPIETSTQKPEQAWHSYIIKARQWLARKSVSQWTPAQRTQFIEEARPIVEAYREAGGSE
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Institute for Fundamental Biomedical Research
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