NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10020349

Scaffold Ga0222712_10020349


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10020349 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5537
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F000714Metagenome / Metatranscriptome924Y
F000868Metagenome / Metatranscriptome853Y
F004666Metagenome / Metatranscriptome428Y
F007470Metagenome / Metatranscriptome350Y
F038241Metagenome / Metatranscriptome166Y
F069753Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100203491F000714N/AESYNPNLLVTYKVIRGYSDPEYATEKVASLEWDLHNGRERQKENSLLHSKIDAVKEIISEAYADSQDQDTLRAIAEALNIELTKTIEFTATIEVTGTIDIDLLSEWDNDFDSEIEENLYVDSQAGNIEISEQYVTNVREA
Ga0222712_1002034915F004666AGGAMATKREYLKTQGITVGLRGRFSSAATKALSEAEAKGMKFEAEKKSPKK
Ga0222712_1002034916F069753AGGCGGMQSKEHKIGELLANSVEDHFFNPAALGRYLAEQPIYTLDRIVEVVAWVIEKQARRYEREYQNNGTVSEGLAVSYKLDQVIDKIKLKNNFDHIRLP
Ga0222712_100203492F000311GAGMYFELTAPDRLSMEMAYWDAQVMGLDPQALSPLTFNIGTGSIEKVSKIRDKHNLIESYVSEYEPTGYTGR
Ga0222712_100203493F007470GGAGMDYQDGFEDGVKFTREVIVANIRVWAETSDDGQIYDEIADRIEFGTVDYDI
Ga0222712_100203495F000450AGGCGGMGDRANFGFVQPNGDTIVLYGHWAGHNMLSNLAEAVFKARPRWNDSSYATRITISQMVADQWNMETGWGLYVNEIGDNEHKIAIIDFKQQTFSLHEEAPRNDLDNKVNGMSNEAIFTMDLSNFVEKYADVVVSV
Ga0222712_100203497F000868GAGGMSDPHGIIGNYRKGGSMSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQLFADYRFAEMCESNYLKGRFNQFYDLKPEDQYYIEWNEEA
Ga0222712_100203498F038241GAGGMLGYTKEDLDQMSNAVHDAKLFYIMKSDVTQVDQDPLVEGLLKANDFLQGLWAEGYFD
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