NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10029326

Scaffold Ga0222712_10029326


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10029326 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4390
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007691Metagenome / Metatranscriptome346Y
F009531Metagenome / Metatranscriptome316Y
F015600Metagenome / Metatranscriptome253Y
F021288Metagenome / Metatranscriptome219Y
F022197Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1002932610F015600N/AMNTTLEPRLQKLIDMGESGTDILHGELKNLMLEAENDYIEIETEEREGGYSDAMLSMERTRAEGRMDALVEVYALTYQLAFAINDRIKNNEQ
Ga0222712_100293264F009531AGGMTKQVAIYEMNYSCSPGGIDCWEATIQGYGESTTASDFKTAGQALNWVLDRYPDEMLELVVTSYPAYEKEYV
Ga0222712_100293265F022197AGGAMTQTVSDPMLQDYYSCDLAISITNIKAKNRHHAEAVMQTFIDEIGKIMTDELSWDDAQWDIEENVFLPELGEWHTK
Ga0222712_100293266F007691GAGVNTIDDLINEIYESNYSHLEFEENMGGDACDCHIHTTLNTIAHYAGIEVE
Ga0222712_100293267F021288GAGGMLGYTQRDLADMTYGVYQADLLINADENPAIHNYLVTAHDFLQGLWAEGYFD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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