NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10029546

Scaffold Ga0222712_10029546


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10029546 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4370
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000980Metagenome / Metatranscriptome814Y
F001019Metagenome / Metatranscriptome804Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F002387Metagenome / Metatranscriptome565Y
F009685Metagenome / Metatranscriptome314Y
F063705Metagenome / Metatranscriptome129Y
F082676Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100295461F009685AGGAGGMKMSDEYIDQILNRAQELLWGGSETENIEAHNLISKLIQDRLEQASN
Ga0222712_1002954610F082676AGGAMPNWVYNTLTIQGPKSEIDFIKDKLNQPFKVLHDSWNMKTNVMEVSESIYSAPVFAF
Ga0222712_1002954611F001125GGCGGMGDRANFGFKDSKGDVLYLYGHWAGHRMLENLANAVEQARPRWTDESYATRICISQLVNEEWPSETGWGVYINQIGDNEHKVPVINWASKTFTLMEADLQTEVFSQSLDAFVSKYSSQPSMV
Ga0222712_1002954613F001043AGGAGMSDYKDGFQDGYKFAREELMEKLSEIDIADIDTWILDRLSEMMEGGTL
Ga0222712_1002954615F000980N/AEYTFKDGYGWPNGVMDLTCRCGTSCTLLSVEDATIPYTDTPLTKEEPMEESTVTTTPVPESYNSNLLVTYKVIRGYSDAEYATDKVASLEWDLHNGRQSQKTVHVLNGKIDAAKEIICEAYADSQDQDTLREIAEALGIELIKEVEWSASIEVSGTYSFNILENDYDMDLESEITDAIFADSHHGNIEINDQEVCNVREN
Ga0222712_100295463F001019AGGAMSYEPSLEILEMEYSCSPGGVDTFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEATR
Ga0222712_100295465F063705GGAGGLTTPTKSSVFLEYMKLHMISLEQDWEKARNNEPLNDDEYDPSDDYFEGATDAVGHLLSVATDIMNDNLQGKGY
Ga0222712_100295468F002387GAGGMASFLEDVNQMVIDAVYQDIAEQLLEDWINSNLDEGQYYADKQFAEMSGDKFIQDEFNKFYELKQGDEGYLE
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