NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10042141

Scaffold Ga0222712_10042141


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10042141 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3481
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001125Metagenome / Metatranscriptome769Y
F003422Metagenome / Metatranscriptome487Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100421415F003422GGAMSVGSCIILFMTNELVSSVYTFICDPDECDSLIQLTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIAPTNQTKEGNNMDGMTVENLPLSDSEKYNPDQLVTYKVISGYSDATYNTDKVRNIEWELHNARTNSKAVSSLQNKISLVKDIITEAYADSDDQDTLRTIAEALEIELTREVEWSATIEVSGTLTIDLLESTVDDVEQEIYDNLYVDSQNGQIEIVDTEVTNVREN
Ga0222712_100421419F001125GGCGGMGDRANFGFRDSKGETLYLYGHWAGSEMLHHLATAVAKAEPRWTDEAYATRICISQLVAQEWESETGWGLYINHIGDNEHKVPVIDWSKKTFTLYEED
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