NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10049095

Scaffold Ga0222712_10049095


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10049095 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3167
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020909Metagenome221Y
F024097Metagenome / Metatranscriptome207N
F058137Metagenome135Y
F089589Metagenome109Y
F096878Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1004909510F058137N/AMVGKKIRSVRVSDQLWRKAMAKAHSEGKSVSEVIVDFLKGYIK
Ga0222712_100490952F024097GGAGVANPNGRKGALFETLVMKWLRERGVSAERLTKAGSKDEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEAYNYAVARGLEQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTKE
Ga0222712_100490953F096878GAGMGLPMNRDPLFSVHNSLNGDFVIYLEERDANLDVVEDVLAAIPLVQLKGIQSLILHDLKSIDLARLMDKARSAVPDLSIKLASISESEALTLAEQLITAVKVARAMRSQPLTTKLELVK
Ga0222712_100490956F089589AGGMSNRLWVNDDGTVTCDNHAGMYLRSAFQAKPKAIKHKTPLGTWCAYYTNLLGGENLVCETCVPWDSPDHPYNKLKAGA
Ga0222712_100490959F020909GGGGGMITKRGKRVRAIAIAVGIIVIWQVASNLWWVGIDAPQAEFLGWCWGSMSECVVL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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