NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10054677

Scaffold Ga0222712_10054677


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10054677 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2959
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024558Metagenome / Metatranscriptome205Y
F039639Metagenome / Metatranscriptome163Y
F065787Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1005467710F039639GGAMNTDREFIKWFYEEQYPEFGSNRRQVYGMTHGTDNINVIDYWMREAFKAGAASQGYQTGTLEEQQAFDTQRNYPL
Ga0222712_100546773F065787GAGGLINKGYVEIRETCKLIEYDLKLAGKGRLWVEVYRDSEYEYRALFPDLDDWSTMPMTILTHKLHETQTNLS
Ga0222712_100546777F024558AGGAMNVILYTEDFEPIIPIDLPLWLLERLEQEGAVRVAVNKPRGFKGEKIPVGMIGNEDMPTVRIRYEKLRWHDGSLKTILVTPDEELALTLTPEWLPGQRAPIQLYLQTVRKMHDELIKQIRKNQD
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