NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10057751

Scaffold Ga0222712_10057751


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10057751 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2860
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002092Metagenome / Metatranscriptome594Y
F005090Metagenome / Metatranscriptome412N
F043933Metagenome / Metatranscriptome155Y
F047046Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100577511F002092N/AMRITNQKAIDYLEANPIVKNFIKELNEFRKNYYEKADMPNQYNEVIVEVGNKFIRIWHGNSCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGSARYGVYGPEYL
Ga0222712_100577512F047046N/AMNKIEELKSVIGKDVSENRSPTCRAKLIKVNKKTCTFEVVKSLYRSGDESRVGERYLVPISWAWNAFFF
Ga0222712_100577516F005090GAGMKTKMKFVWCGVNFELPAECLRTTDYWGKTLENPYISIGRKECPAIAKQFMKAKYPHLLVWGSSETFANGNSATVNVCNADGSDLDLDSKEWNEINSFVRQMCGGRYDGWSESYEYGEPGKSDNGTKLDFGTKYLHVENRAPHGSWPSAIKTLKGLVAGEYVFGPLSIEKAIEKAKGYGYSENTIKKVLELV
Ga0222712_100577518F043933N/AMDIREQCRERATKFAIEYGFTNVSEHILDIMVSIMCTRDKSSYAGG
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