NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10059189

Scaffold Ga0222712_10059189


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10059189 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2818
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019644Metagenome228N
F040082Metagenome162N
F058107Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100591894F040082AGGAGMTQDPYAMSQEIVELQTRVAELSVALERVTEQRDDAIDAAESLHQELEASRDRIKSLGGQLDRLRIHLQQGIEL
Ga0222712_100591895F058107AGGVITIGMDSFIVCQICDGEVRLDSRRIAGCLCDPDAPTWVGIEPNGRLLAFSQSHYEIVKEKSPHNYD
Ga0222712_100591897F019644AGAAGMSRGEDPFDDKVKAFIESQVDADNICTAFVLVATIQNFITTEEKFFTLCPPEQVTSTTIGLLESASAAEKLRIARQLLEDD
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