NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10061795

Scaffold Ga0222712_10061795


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10061795 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2744
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045098Metagenome153N
F084240Metagenome112Y
F095471Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100617954F095471AGGAGMKALYLTIGMIYALLSNNSYSQKLEETVKTELPCYNTTELFKSLREKFKELPLLTGKTDDDANSTMSLWLNPIHNDWTIIATKKDLSCVIGTGTDMKIIPTRKGTAV
Ga0222712_100617955F045098N/AMNGRELQLMYQQWCQGNDDYNFRWLDFVEMAARHFKQPESEVLRELQKHYWFVKNNK
Ga0222712_100617956F084240AGGAGMSWFKHKPRPKNPPKLHAHHTSPIAEKLLKETKLEVTGVKAKLEALDIDKKKKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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