NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10075919

Scaffold Ga0222712_10075919


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10075919 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2415
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000980Metagenome / Metatranscriptome814Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F034472Metagenome / Metatranscriptome174N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100759191F034472AGGAMPNWCYNTLTIQGPKSEVDMIKDRLNAPFTLAQET
Ga0222712_100759192F001125AGGCGGMGDRANFGFKQSNDTTIFLYGHWAGHGMLERLANAVEAARPRWTDESYATRICVSQMIGEDWKSETGWGLSVNRILDNEHKVPVIDWAEQTFTLMEEDLQTVVFSLSLDKFCTKYSQLVM
Ga0222712_100759194F001043GAGMFQTTNQQGIQGDKVSDYKDGFDDGYKFAREEMMERLSEIDINDIDSWILDRLCEMIEGGKL
Ga0222712_100759196F000980N/AMTHYQKYTWVCTGDCDALIEYTIKDGFGWPNGVMQLTCPCNSRCTLVSVEDATIPYTDTPLTKEEPMEESTVTTTPIPESYNSNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNGRQAQKRVTTLLSQIDAVKEIICEAYADSGDQDTLRAIAEALSIELIKEVLFTASIEVSGTYSYNILDSDYELDLDSEVYDALYADSNNGNIEINDTEVCNVREC
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