NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10110737

Scaffold Ga0222712_10110737


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10110737 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1905
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021979Metagenome216Y
F024555Metagenome / Metatranscriptome205Y
F039484Metagenome163N
F088902Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_101107371F088902N/AMPHIPIPPKPTMTTQQILQKLQQVNAGNIYNTPVTQPILDAQQIADIAIEQAKKVFQEYVKQEQEKKKTILTIENIDKIIGQDYSDSLKVGGVKEWDTHYEFTLLYVSGNQIETILLHRRQTSDKRYIMEYKGQTLWVSKDRLSTIAGIIECMIEV
Ga0222712_101107372F024555N/AMLTIVNIEKLYKLNVGNWRIGKVVTLDSSYLMQLYKYNSMDTMQVNIERTPIGEGDTALYELWFWSDDLGGGIPIRRLLRKCDFELGPLYIIKNIENMLKC
Ga0222712_101107374F039484GGAMIIQNPDKLLKQWIPGTNGDIWFVDEMSVTMDSHGTAYIFRCTTEWPVKTSPNQQYYHSTRRMHKVVTLRLTETDYGKNNVYSVSTDEKVWRGYCKDIDTMDKFILVLADLLPNTNSL
Ga0222712_101107375F021979N/AMLTIENINILNSKFAGTPEWQIGEMFIGEQNYIFVIHKRVGEWTIYGVKHKELTVKLNRERTMHGYEMETGIVRQTYYSRSAHTIDSMRTIYGFTMCLDGHIKNVIK
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