NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10147945

Scaffold Ga0222712_10147945


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10147945 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1588
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001731Metagenome644Y
F003290Metagenome / Metatranscriptome495Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_101479452F001731N/AMTIFNPVWRVTIGGVQYQTAILANLTITSGRTNIYEQAQAGYTNLEIINLDQSNVLIEINDSLTIELQDSTATYVPIFGGSVVDVGISVAEVGSVDYAQRINIIALGALARLPKALTDGVLPHDFDGDQIFTILSEVLFAQWQAVPAALTWATYDPTTQWQDAENTGLGEIDRPGNYELAQRSSSRTDVYSLVAALASSGLGYIGESATGQIFYADSTHRTNYLAANGYVELTANHALASGLSIQSRTGDVRNNITLKYGQNSQNETSASDIASIGLYGQLSQIFTTTLRHLADAEDQADFYLALRAYPRFNFNNITFELTNPELDDADRDDLINVFMGMPVEISDLPLNMNSGDYLGFVEGWTFSARYNQISISMILSPISFSLQAMRWNDVPVVEQWSTVNPTLDWINATIVA
Ga0222712_101479453F003290AGGAGMSNPTSNFGWQMPTATDLVTDLPADFEVFGQAVDTALMDLKGGTTGQVLKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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