NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10453740

Scaffold Ga0222712_10453740


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10453740 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)768
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011150Metagenome / Metatranscriptome294Y
F013409Metagenome / Metatranscriptome271N
F055677Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_104537401F011150N/ANKTHHKIIENFRHDIIMRKLKQKEDKEFRNMFIKIFLIIVIAVLLLAVINNYR
Ga0222712_104537402F013409N/AMKVILMLIMMNGTVYNLGYKVESYNARTCDKLFDSVTYKGKTSGKNKQGTFYKSKEVFAYSCSIEKTTKGNNERKNKTS
Ga0222712_104537403F055677N/AMKEKIKQVNDLCLANGAYINQHGKKTVSAWSKIKYFREVFGTEFGINCVIQEHSDRYVIMKCIITKCDPEHIIATGYSKQFRDKPGYIEIAETFAITRALSFMGILLEDITSKEEYEELEIPVQPMNTKGTS
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