NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10003554

Scaffold Ga0222719_10003554


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10003554 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13840
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (97.06%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032638Metagenome / Metatranscriptome179Y
F040932Metagenome / Metatranscriptome161Y
F048233Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0222719_1000355412F032638AGAAGGMMFEAFVFICMLKDPMNCKTLQDTEGPYRTEKQCIARVYEIAVELPEYLPQYVATRYKCNKEAGI
Ga0222719_100035542F040932GAGMRKEELYLKLAKPFMKIGSYLYNLHVKALRKRQVKEGSRQERL
Ga0222719_1000355427F048233AGGAGMANASAKVTEVNLKVKPQELLILIDALYENLEDMECANDDFSQVTLNVDGRLPFYKVEKQSDPHVREWFIKYRRLAVQLDRMYIKVKKLEGVW
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