NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10054486

Scaffold Ga0222719_10054486


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10054486 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3036
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002733Metagenome / Metatranscriptome534Y
F003073Metagenome / Metatranscriptome509Y
F028792Metagenome / Metatranscriptome190N
F029289Metagenome / Metatranscriptome189N
F029934Metagenome187N

Sequences

Protein IDFamilyRBSSequence
Ga0222719_100544862F029289GGAGMTSAITPRYPNAASDPRLTNTADKYFTLRRQIRDKEWSREPVTNAERDKLATLKQALNDDKHYTPNF
Ga0222719_100544864F002733AGGAGMMTKTDKIWLQLTRNEANAIMVMLDGEMENTHDVAGIDLSDWENLDLEAYKLLAFHKFKTWYMENCDG
Ga0222719_100544866F029934GGAGMATIVRTCLACDGGGIVEYDKPVTDFANGGWIDSSYGRCDACDGEGDLHVLSEFTSLDMMLFLNEVAKILEDADIVDSKLDDIYGHVKDAKDKVREYIKFHGYDGDDR
Ga0222719_100544867F028792AGGAMSDRGDYKVRVRLTTEREVIVNAEDFDDAEFKAIKEAVALVDGYDAEVLWALEHGSLSDWEKKDGNDS
Ga0222719_100544869F003073AGGAGMAKKYENMTHDERIAHWENIREKERIQRRNRIAKLSLDQRVAVINIYKLLDEVLDTALYPDMGGIKCVTAYDLQELSDAKDKLRYEFNFDVREQG
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