NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10112835

Scaffold Ga0222719_10112835


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10112835 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1970
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002738Metagenome / Metatranscriptome533Y
F006619Metagenome / Metatranscriptome368Y
F013517Metagenome / Metatranscriptome270Y
F015987Metagenome / Metatranscriptome250Y
F038646Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0222719_101128351F006619N/AGKPSCSCGSFQRQLSNLSAFQEEIEGFEPWCIHLTWFNRYRELLCKRTEARNASPSGTPEKCVAWWYAPPSDHISNGRFVLLYTNSGAQAPLSHWRTYKPKEVFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAIKK
Ga0222719_101128352F038646N/AMKAPDDILDYARQLASQTMTTPKNHDYHLDIPDDLHWELVRLGAELKMDYEVYAEEVLKMHAEDAISTRITTKAYSDPSWVTKLKLECIDEPDGTMTIHIEWDEKDPDLQYWTNLGAKGQENFILTSLHSACESVLSDHDN
Ga0222719_101128353F002738N/AMTIDTYGLGFDQYEDFFEKNIRLAARLYLKANTIIVNEGVTHADFKTLLDLYQEAIYGTNDECRRYQRCNNPEALKEATADIFGITPSREELMGEIQSVNAKVEALTDYVAKLVEATTDGLNGIAETLVD
Ga0222719_101128354F013517N/AMFESLFATVLPVMKDLLWAAAGMLLTYMLNKIQTYTS
Ga0222719_101128355F015987AGGAMTQITQTKLNELSVIKLYEHYGALERSLPLLTPESQELAKAELEACANLRSEKVDRVYYAMASHEDALERIKKEGELITQAKRHHESQLRSLKGLLNYLRRVLPVDTNKITGRNYQFTL
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