NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10119171

Scaffold Ga0222719_10119171


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10119171 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1903
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002738Metagenome / Metatranscriptome533Y
F013517Metagenome / Metatranscriptome270Y
F015987Metagenome / Metatranscriptome250Y
F017987Metagenome237Y
F038646Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0222719_101191711F015987N/AMTNQITQTKLKDLNVIKLYEHYAALEKSLPLLTPESQELAKAELESCATLRSEKIDRIYYAMASHEDVLERIKKEGELITQAKRHHESQLKSLKGLLNYLRRVLPLDTNKITGRNYQFTLVKKKELTVEISTDPEFWH
Ga0222719_101191713F013517N/AMFESLFFAVLPVMKDLLWAAAGMLLTYALNKIQSSFQGIPS
Ga0222719_101191714F002738N/AMTIDTYGLTFDQYEEFFDKNIRLAARLYLKTCNILNEEGAGHVDFKTILDIYQETVYAANDDCRRYQKSNNPEALKDGDLYNISPTREEIMDEIQSVNAKVEALTDYIGNLVTVTTVGLEGIATTLDDKVD
Ga0222719_101191715F038646N/AMMFSMKAPDDILEYARQLVANQPMKPPAHHNYHLDIPDDLHWELVRLGAELKMDYEVYAEEVLKMHAEDAISGRIVAKAYNDPSWVAKLNLECVDEPDGTMSIHIEWDEKDPDLQYWTNLGPKRQEDFILTALRSACDSVLSDHDN
Ga0222719_101191716F017987N/AARNASPSGTPEKCVAWWYAPPKDSISDGRFVLLYTNSGAQSPLSHWRTYKAKEVFTQYYAWDLFFNMMEAGYVPFPGVSLPQLKSAIKK
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