Scaffold Ga0226662_10041745

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0226662_10041745

Scaffold Ga0226662_10041745

Overview

Basic Information
Taxon OID	3300021966 Open in IMG/M
Scaffold ID	Ga0226662_10041745 Open in IMG/M
Source Dataset Name	Food waste microbial community from Durham, Ontario, Canada - FW2 spades
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Toronto
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1842
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location Name	Durham, Ontario, Canada
Coordinates	Lat. (^o)	43.6629	Long. (^o)	-79.3957	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081962	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0226662_100417451	F081962	AGCAG	MQIKLKAVYTLVEQLYIGSQRALAVVALSNDVPHLLQDVLQRLAVLPQRIQELRRAQARAGAIAALSRAKAWLPELDPADIALGYPSLKEDGTPFDEKDFTTCVRDIRPVATQIGNDTDLTKCQPGYDKENRRIPTPHYDDVSLIPPTRKHTFAPEVDPAGLIDDEAEFEALSGIDWASSSFQDKAAGGEAEKDNPEASSQPQE

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.