Scaffold Ga0193737_1001148

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193737_1001148

Scaffold Ga0193737_1001148

Overview

Basic Information
Taxon OID	3300021972 Open in IMG/M
Scaffold ID	Ga0193737_1001148 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2m2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3481
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8825	Long. (^o)	-106.9105	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001699	Metagenome / Metatranscriptome	649	Y
F062540	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193737_10011483	F062540	GAG	MAIPWQAWFALSWAVIGPPLLVYAALRVGRGRIPLHAALMIGAALVTVGVLVSFGFVTEPSPRRTLLLALPLFKIHLAFAFTSLAGIAWQFTSRAVPRLRPLHRHTGPYIVLVWCLALVTGIYNFVFLYVMGGP
Ga0193737_10011484	F001699	GGCGG	MKVVLRHFFIALLPLVFGVGAGWGFAFYQKYAHNTCGRLVGPVFAPKCHWIQLEYQIMFMMAGTALGCIVAATLGSWLELRRRRVVQPADPNQGGPS

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