NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0232646_1063230

Scaffold Ga0232646_1063230


Overview

Basic Information
Taxon OID3300021978 Open in IMG/M
Scaffold IDGa0232646_1063230 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Perseverance_CTD_V16A_01_btl17 _150kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1270
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NamePerseverance vent field water column
CoordinatesLat. (o)15.47990499Long. (o)144.50763029Alt. (m)Depth (m)3625
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017326Metagenome / Metatranscriptome241N

Sequences

Protein IDFamilyRBSSequence
Ga0232646_10632302F017326GGAMNDYEKVKIEINESVTSDNFKEHLRKNYHNSYDEYESDTRHIDLDVFYEEMSIPINEIVPKGMTIKEYFGKEQRLLRGESISYINFD
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