NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0232637_10723136

Scaffold Ga0232637_10723136


Overview

Basic Information
Taxon OID3300021980 Open in IMG/M
Scaffold IDGa0232637_10723136 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Burke_FS924 _150kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)502
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameBurke vent field, Mariana back arc basin
CoordinatesLat. (o)18.182568Long. (o)144.719893Alt. (m)Depth (m)3630
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001135Metagenome / Metatranscriptome767Y
F017656Metagenome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0232637_107231361F001135AGTAGGMTTIIYKDKKYKLPFVVKSHSTAMVKRTNGQSGQSIDLPCFAACVYDYTMYMSATTEEKDRQTNQAPGFSDNQDDWQIVRNGLNFFRRYFAKEYMVLLD
Ga0232637_107231362F017656N/AMNYFIHDERDLSPAYVKSCKKFLKEISHKLQAASAMKQTQLKSR

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