Scaffold Ga0226661_10050085

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0226661_10050085

Scaffold Ga0226661_10050085

Overview

Basic Information
Taxon OID	3300021982 Open in IMG/M
Scaffold ID	Ga0226661_10050085 Open in IMG/M
Source Dataset Name	Food waste microbial community from Durham, Ontario, Canada - FW1 spades
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Toronto
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2156
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Aerobic → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location Name	Durham, Ontario, Canada
Coordinates	Lat. (^o)	44.1763	Long. (^o)	-80.8185	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004001	Metagenome	457	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0226661_100500853	F004001	GAGG	MLPRVGTESPSLEVFKNHGDVVLRDVVSGHGGDGLIVGLDDLSGLFHP

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