NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0212030_1002865

Scaffold Ga0212030_1002865


Overview

Basic Information
Taxon OID3300022053 Open in IMG/M
Scaffold IDGa0212030_1002865 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1773
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033251Metagenome178N
F067196Metagenome126N
F082525Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0212030_10028652F067196GGAMPKFNNIEEKQKFFRNAMRKLDTGLPKEASPDLIKFFVLHVITAYDHDDCWDDIKGFVDFALKEKSQFDSARQAVEDADNMLDAITNSKDK
Ga0212030_10028653F033251N/AMSRLGFGRLARTVLVLARLKPIERMNVMADKNKRKLTSTKRAMLRWTGKEIDQLLEYKATGFKHSEIGELMGRSTKSINVKMSKIRLGVEKASNPVEDLTPFQKNLDSTLFGDVSPDDKPKKPRKPRATKLSLTPQPKAADAFNVPKKPVYVAVVLGLVIVAWYLGSMS
Ga0212030_10028655F082525GAGGMDYKINSGVPIPDVVSGKKRGRGKWQVLLSSMNEGDCVDIPRGSYNSIYVAASRLGITLMSRREADGLADGFVRIWRVSDG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.