NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212025_1000574

Scaffold Ga0212025_1000574


Overview

Basic Information
Taxon OID3300022057 Open in IMG/M
Scaffold IDGa0212025_1000574 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3021
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.149325Long. (o)-75.288339Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034560Metagenome174N
F055697Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0212025_10005743F055697AGGMRTAAAVFVFCTVLHFPVPDGWKFTIAEPPAAAQLDWYLVSFGAEWCGPCRAWKRDHLAATRKVLPVVTVDIAKAPEWKRSRQLAAPPGGRATIPGITRVPTFWLVHRASRWPVKTWVGGRTAEQVRRLIPETVPGWTRETEAAPPLPE
Ga0212025_10005744F034560N/AMADDNETPQDGDDNGIEWRTLNRTVRVDAATSQKLIDWIGPHLRLIVAAVAWGVFIVATCYAASLVL
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Institute for Fundamental Biomedical Research
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