NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212023_1001877

Scaffold Ga0212023_1001877


Overview

Basic Information
Taxon OID3300022061 Open in IMG/M
Scaffold IDGa0212023_1001877 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2155
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F021188Metagenome220N
F046006Metagenome152N
F053545Metagenome141Y
F090883Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0212023_10018771F053545N/ATTHNGYVMLPIEDTRKNIEGGRESKIKWSGETLPEVGKE
Ga0212023_10018772F090883GGAGGMVTIALTMHRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKIH
Ga0212023_10018773F046006GGAGGVKEYLGPLAKYINLILLLIILHFCITVMVVNFRYIDRLNNTIDTMWHEIVQVKETNISLYQFIEEHGNDITGR
Ga0212023_10018774F000720GAGGMTLQDDKIMRHEIPNRMMSTTFTLPIDNRKVIGIVNYTAGAEGITPLAFWVKIKPTDSYIDRELRASGKLISRCLQHGEDLKELAETLSQDNIIGQMVNYFNKNVEEIIMGQQSNKKQRMLSTDPYASQMKE
Ga0212023_10018776F021188GAGGMKMTEEIDIIWIPEEETKHSLTVENAQGVNELVDLPASTVDRICKKKFGHTNWARMGAIFPEELGRNPHEIDYLEGIVYFKNSRMV
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