Scaffold Ga0212029_1017898

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0212029_1017898

Scaffold Ga0212029_1017898

Overview

Basic Information
Taxon OID	3300022063 Open in IMG/M
Scaffold ID	Ga0212029_1017898 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	933
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.8455	Long. (^o)	-76.4191	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018920	Metagenome	232	Y
F088807	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212029_10178982	F018920	GGAG	MNYKLINNTTADDFLLEMLKLGKPIECSLVGAFDKEGRGSRRDIDLPLHRDGDYSTEVAKKNNIDWVGLYCIKEGESITILEMPTATIEINLKKGQALIFDNQVCRHARKGAVGDRLLLRVWIENETG
Ga0212029_10178983	F088807	N/A	GYYLEVGLTGTDFRFRMKLKTRVGDHKGLQEELDKFSKVETWEKFSERFVESAGGLAKMEREWNKNYAKLVGHDHHNVKAEGYWELAENKE

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