NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212029_1056834

Scaffold Ga0212029_1056834


Overview

Basic Information
Taxon OID3300022063 Open in IMG/M
Scaffold IDGa0212029_1056834 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)569
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.8455Long. (o)-76.4191Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022858Metagenome / Metatranscriptome212Y
F091975Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0212029_10568341F091975GAGMETQELIIAVVTILGSGAAFKFYEYSIRNKREAARELREERRAENPETMFRDDLLKRVNEMSVALDSANLKILELTQKVA
Ga0212029_10568342F022858N/AILSFADSEFLELLIAILHTFLLPLAVITEIGFKWHVIILAIGGGLFQFYSVGIRDLRCRYYSTIVASFVAILTAEQYLMNGLMFEAPSRFGWLVIAFAAVVNQIRVTKQWKHKN

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