NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212024_1000582

Scaffold Ga0212024_1000582


Overview

Basic Information
Taxon OID3300022065 Open in IMG/M
Scaffold IDGa0212024_1000582 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3095
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032640Metagenome179Y
F073494Metagenome120Y
F101078Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0212024_100058211F101078GGAGGMEMIKRTGIIKVSQSGMAQEIVMRYQGLRLQKVESAQIPLRYKRNHYVNIYKDLKSIVKK
Ga0212024_10005823F032640GAGGMRVIDSKISTLISRGLKGEAFDRRLSKRDRVVSDGTGKVRVILWNTEIATFDAQVDEITVKSGSYQTVTTKSRINAMLYGWAKGNPSISQRKWVWYIDEVCPLTKDRKSKEFQGVARFPLKVWR
Ga0212024_10005828F073494AGGAGGMTDNQWESNEISMWVNNDESLHQLAQRSESSNDFFDVLEMIGVSHLGGIKITPWNVRESWEDAND
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