NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212024_1002983

Scaffold Ga0212024_1002983


Overview

Basic Information
Taxon OID3300022065 Open in IMG/M
Scaffold IDGa0212024_1002983 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2038
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010313Metagenome / Metatranscriptome305Y
F015461Metagenome / Metatranscriptome254Y
F025231Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0212024_10029832F010313AGGAGMTLEQNIIKGLDDAAIARVYHRKRQATHKAATFTQTIALWLFKATALANFGLIMFCLGYFSTLYSDGWLIEIPGLVSYWIDFGGSQ
Ga0212024_10029834F015461GGAGMENILAELKAIMQGAQEASARAGEYKNDIDRGINVNHTPEYDTSVTKQDKINSLFEYLIDAKDDMDRVKDSLKDIHDKLDDLLELVEYENIAKGIR
Ga0212024_10029835F025231GGAMEIRETYYELYLDGTLYHEGTLEDCTEYAQRALDDDCAEVYKVTVTEEK
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