NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224902_100062

Scaffold Ga0224902_100062


Overview

Basic Information
Taxon OID3300022066 Open in IMG/M
Scaffold IDGa0224902_100062 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5021
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024093Metagenome / Metatranscriptome207Y
F031892Metagenome / Metatranscriptome181Y
F033254Metagenome / Metatranscriptome178Y
F066695Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0224902_10006215F033254N/AMTSTRKYTHNELWKSEHIIDGMIYCNDIEKWITVEEYTDVYYGTL
Ga0224902_1000624F031892N/AMKTDKFNAIVHELDSYAQETMNKKGPEYTMQDKDVLNNFKSTAKKLGVDPLVIWYAYFDKQVSSVAAHVSNEDLNKAEPMISRFGDIINYAKLGYALFVERDKL
Ga0224902_1000626F066695N/AMAELLTDDIIYEALEADGIMQEPDANWLLEYINTEYGGELDKDSSWSDNKHELKIYSESTADSYDIYWCTYDEKPYVSQDGYQYEAYDDWSEQAIEALCDGQKVWIESHIWDDMEYEFNHALEQWWTDIYEDILCADKKDELLDSGDYYEDKDNK
Ga0224902_1000629F024093N/AMNIVAEEIADATIKEIYKDCDWQVDQFLPKDAESPIINDTHSYLMRLVARHIANKLDVTTNKYYDE
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