Scaffold Ga0196889_1000004

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0196889_1000004

Scaffold Ga0196889_1000004

Overview

Basic Information
Taxon OID	3300022072 Open in IMG/M
Scaffold ID	Ga0196889_1000004 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	63709
Total Scaffold Genes	83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	77 (92.77%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F103907	Metagenome / Metatranscriptome	101	N
F105932	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196889_100000420	F105932	GGAG	MDKSQKSKSTKPLRLISADSLEMSRRINNEWRKYKNGKLGSELTQKNAADQIGVSQPMFNQMLSGAVSINPMMVLSVSALLRCDLGALVAELEEYKLLNAVSPTMRSEIPVSITLSGKPVLNRVVSIMTHTMSGAFAVEIDTDEYSPRYSNGEYAIIDPLAKWEIGNQVLVRYGKGACIIRVVSGIKGDEVQTYHPTEVGINTTVDLSDPSISVCGLIRGVQF
Ga0196889_100000458	F103907	AGGA	MTKVNTKVKAAAFEPVRTEQTVTGSFQMTEQFSTYLQNQIDFLSQMACNQLGVIANYGNIAAFQTTPSFEQMFGDDMGIAYDSNQRELKYCANTVANSHDMFVQIKPVQDVYGTQDAQGVKDTVYADTDRNKIQLSEFGYKVVSETSERFTQTMSDISLLHDMFNIVPTTSRKERYEIFVVTELNKKRSKQQAQSRTEAKFAENKQHNDVVLQLVKVAQSTAHLV

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