NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196889_1023543

Scaffold Ga0196889_1023543


Overview

Basic Information
Taxon OID3300022072 Open in IMG/M
Scaffold IDGa0196889_1023543 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1273
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003051Metagenome / Metatranscriptome510Y
F015812Metagenome / Metatranscriptome252Y
F106085Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0196889_10235432F015812AGGAGGMISKTLYKRLEDICAREYVVNKLSEHKFRTFVDFLYDDIRTWDRPTDVSDVDVIHRVEEHLSHMVSRSLADAHIGTTHD
Ga0196889_10235433F106085AGGMTNNPLESLRKKLYFLLDNLKNKFRMLIKSKQNNKIIIKKDIKNNIPKHLKGLNNKQLKDLQSLFKKRI
Ga0196889_10235434F003051GAGGMKVKHLKTKVSIDMSVSEYDTLFKYINKIDSMLNTLHETNDLWLSDVHNLSSLRYELVELLDAEWDSNTYRYIKRGSK
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