NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1000855

Scaffold Ga0224906_1000855


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1000855 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15923
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (88.46%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011228Metagenome / Metatranscriptome293N
F012352Metagenome / Metatranscriptome281N

Sequences

Protein IDFamilyRBSSequence
Ga0224906_10008554F012352AGGMAFSRGYNLLKMVDEFGEPLTLKKKTTAGSYDPTTGTVTGSATTDYSFTGYFYNYDQGIIANVDEIRRGTRKCVVPALGLEVEPDDEDQIIGNGDTVNVISVVTIFSNGVKICFLCDVRE
Ga0224906_10008558F011228AGGAMDLLDLTPTSDTVDVTIVHPTSFDVLNNDDDTPMVITVYAPHSKVYKAAVHEQTNKRLKQAQNKKKVEITAEDLEDATLDLLAKTTKGWKITYGGSKPKFSVAKAKEIYAEVFWIRDQIEEAVANSLDFTKA
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