NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1003715

Scaffold Ga0224906_1003715


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1003715 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6666
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006530Metagenome371Y
F021866Metagenome217Y
F051867Metagenome143N
F100994Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0224906_100371510F100994GGAGMKLETKKLVKEATAKKRYPKYDTQYMNYNEADSYYIEVYTNVKRVIKLEARTEEEAIKKALKREERRKTRNCYEFVDCDYNIVEKKEYEAYRQNNQEIRRGSS
Ga0224906_100371511F051867AGGMFKAMLLICSLVHGSGDDMKCFELHDMEAPNGYTTEEECMGRIHEMVDITRSMVPFPYQVKYKCDKTMERTHNEIRNKETS
Ga0224906_100371512F021866AGGAGMEEIHLQETQLEYEPIHRTDVSWQQAVQKVESVLNDVCMEYEKDGHPYYADVLRVYWRRILKG
Ga0224906_10037159F006530GGAGMRLIDRIIKRFEEEAVEYASVGMEEEAKDSRRLASKYTEMKYNGHTHSLRMEINEKWQKK
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