Scaffold Ga0224906_1004433

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0224906_1004433

Scaffold Ga0224906_1004433

Overview

Basic Information
Taxon OID	3300022074 Open in IMG/M
Scaffold ID	Ga0224906_1004433 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6022
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000464	Metagenome / Metatranscriptome	1105	Y
F002602	Metagenome / Metatranscriptome	544	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100443310	F002602	AGG	MKDADQIKTLSVAIEEKELQIKKLLAEQGNLEVQNAEYRQIVQELSDKLKLYESKYGVVYRSRNT
Ga0224906_100443311	F000464	AGG	MKLSPKNQHKFAQYRTYRHHDHDIDDFEEDFWPIIGILATVWGAWTGMVHLIDYLTWDGLAWYVEPFTIVPALFLLVMNERYNSLNPLHWWPMFWGYDAKLPDEDRITIRPTDTDRIMTEHGGRLNVHIVDYQTIKFRKKKDAVIFGLRYS

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