NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1005599

Scaffold Ga0224906_1005599


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1005599 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5266
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019754Metagenome228Y
F020110Metagenome226N
F022313Metagenome215Y
F023484Metagenome210N
F044802Metagenome154Y
F098218Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0224906_100559910F044802N/AMKHDPTATALYRAREDLRMLETCPTWYDHFDKVEAAIAEQDRVYDIRVAAGWEADEEGGWCAPCPETGEMIPEWNWLDCGLAYPEDAK
Ga0224906_100559911F019754N/AMNHDSDDFMLPSELEPAWPPSDDDIEAMQLDAYDKQKLDDLIAEELWRESLPSVPTPAELNPNLK
Ga0224906_10055993F098218GGAGGMTSFSSWSKRPEEMRAAAKTRAIAALHQKHSKGLTTLERAYLHALRTGRLDVDLED
Ga0224906_10055995F022313N/AMTYHYKPEQEYESTKIERILKELQSIIKRDNKRHMMDQHLTHSMRDLLEYEIIPLLEAEVDYDPTPQTSYDFFHR
Ga0224906_10055997F023484N/AMKINTKSGGFLIASLGRYTSKTEKIIFFRTRAGSMVSSYYISTFNSIKEGDGLMLSNSCDPDQVIDADQVAKCKAFIRNHS
Ga0224906_10055998F020110N/AMSTHLEVKARLSYARAMLERNIPTNTLATLISSKFHVCRSTAYNDIQAAQAEIDLSDDGPSFEEASEPINTDSVLALLQHRLEVCVATGDDKAICSLIKAMNQAKQWNGYRTQSASPFA
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