NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1007112

Scaffold Ga0224906_1007112


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1007112 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4559
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004603Metagenome431Y
F019114Metagenome231Y
F048285Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0224906_10071123F004603N/AMIFSININGLIIDWCYTINNQEKQYHQTWIPKIKDIQIITKELNGLTVSEVKKTILKDIQPDIQMVRDNTNKKARARRENHV
Ga0224906_10071125F048285N/AMKIDQEQLEKATAFILETNKYIYEQAGELAKQHLEAEDNKNFKARIKRYEPESKETLLHFTDEVTAWAECEKNYPLMDFIHKFFRIKKGYKNELY
Ga0224906_10071127F019114GGAGGMKQFNSRMVEARDEFYRNRRDKGFMAFWWLDPLHYVLVLEVAIADASSKSINFEAIVKLLPSSMGSRSTVATVLDDFVARGYMCKKVGKDKRERVYTICKDSMVLMNEWFTKRDFSLKAV
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