NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1007762

Scaffold Ga0224906_1007762


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1007762 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4318
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007621Metagenome / Metatranscriptome348Y
F012403Metagenome / Metatranscriptome281Y
F017047Metagenome / Metatranscriptome243Y
F035971Metagenome / Metatranscriptome171N
F067120Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0224906_100776212F007621GAGGMQNSTSKSLTVVNNTLEAEGFALAKEWKSITKGDKARFTKATKADGFDTRLGKLIQKLKAEGGERINSQRLKDCGIDSIDKRRRSEALWFVENETACRDFIKASKKGFTSLTALQAAMKPKAPTKPKADAPFAVPQEWVDEALDKSKVGLDSEADKADKSPSDIALDALVQCEMNGIAIKDFMLALKEQLEMLDEDKVAA
Ga0224906_10077624F035971AGGAGMGNLTWNEVAQIEIDKRYMDMYGLSQLDMEDMLDEDMPCMLAMSILSDAQHVMSYDQEQARQFINRAKYVIRHIKSNVGLKTTPTTNTLTN
Ga0224906_10077625F067120AGGAMQIKLENMKNQKTTKPEGKRDQWRSYNKRKQNVRRTARRNTQIAQEQSYG
Ga0224906_10077626F012403AGGAGMRIRPINPVAKAVAQSRRRTTVVPDKTKYNRKKDKHDANQAGKHEEPKDN
Ga0224906_10077629F017047GGAGMQNRKDELIQTLWDLFKDVHGVRPRGRDYANWHISDLEMEVWQLQRQLEDDLRYQREQEDRAINACMDCGASDIATAMRWLEDAYEMEWV
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