NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1008283

Scaffold Ga0224906_1008283


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1008283 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4145
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028800Metagenome / Metatranscriptome190Y
F060424Metagenome133Y
F077184Metagenome117Y
F078595Metagenome116N
F083396Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0224906_100828314F077184N/AMKRKVRTYRITSMILMIICTVLLIKSNYHNNEKADIIDKYFDLQEEYDKIFDDVQVLEEYSEKLEEQVDLLTSFIADKEYEIDTVTSGKEVVR
Ga0224906_100828316F083396AGAAGMNNEDLYHDVAVAETVDKFRRVLMNVFDGDADAMLGELESRMASNEDYETAAQMRDIRKKLNG
Ga0224906_10082833F028800N/AMKIEIEDGYDGFERHVTGNIDLDGNNVYEWELDTYDGFTSIYLIDCEVRINLEDEDDLHLFNIDEEVGEEIYDEILTYVNDNGYDFIGEDFE
Ga0224906_10082834F060424N/AMKRKDILSKIEETYNKIYAFTDRMGDEALNVLDDHTDRYNLADEDAILMEALVDEYDPTNLSKDTLSCLLDAYKDALADLRCE
Ga0224906_10082835F078595N/AMKNKNVVISDFEIVENNLLGINTDKLINKFLELFSSDPDNMSNSKYVNKLNNFLNEINSNYICVNKLSVNDEGEIFWEFKYKYNY
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