NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1008767

Scaffold Ga0224906_1008767


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1008767 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4007
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009067Metagenome323N
F018831Metagenome / Metatranscriptome233Y
F018932Metagenome / Metatranscriptome232Y
F031501Metagenome / Metatranscriptome182N
F050306Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0224906_10087671F031501GAGMTSELLDLFDEAKTIIDKQEQLIKMQQSLIKTMQQGLQGVELNELLLKKQLADLQEELKAITNDYIDTKNNFREGGEKV
Ga0224906_100876710F009067N/AMKNKSKQVWYLYAHDIKELKTQCYDVISTLYVQLGQAPEAEIIVQMTNLFCNDLATNYGSMELEEVRFALNKHIRENDGPHFVNVPMWSQALRDYKKSKALKRQTNQIDQYEVYKKRVESFSKAIDKREIKKIGK
Ga0224906_100876711F050306N/AMTDYLDIKERKDVTVKNMFKLYKTDNKYRNRITWDAHYLITGWKHIQQTKDEKQK
Ga0224906_10087674F018831GAGMKIIASVSIELKVGDTELLDEAKDRAIDTLIDSLEEWINNNGIPPIISLEYKLPEYDDNDLEFLN
Ga0224906_10087675F018932N/ALKSNRATRHQEIYKRTKNGLELVLPKKISSDIGFQLMFGYREDYRVEEKRMEDNANRYFTKTYIDVEDFKKYI
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