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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022074 Open in IMG/M |
| Scaffold ID | Ga0224906_1010195 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3654 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (90.91%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007621 | Metagenome / Metatranscriptome | 348 | Y |
| F012403 | Metagenome / Metatranscriptome | 281 | Y |
| F017047 | Metagenome / Metatranscriptome | 243 | Y |
| F017755 | Metagenome / Metatranscriptome | 239 | Y |
| F031294 | Metagenome | 183 | N |
| F037204 | Metagenome | 168 | N |
| F067120 | Metagenome | 126 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224906_101019510 | F067120 | AGAAGG | MQIKLENMKNQKTTKPEGKRDQWRSHNKRKQNVRRIARRNTQIAQEQSYG |
| Ga0224906_10101952 | F007621 | AGGA | MQNSISKSLVVVNNTLEAEGFALAKEWKSITRGDKSRFTKATKADGFDTRLGKLMQKLKAEGGERISSDRLKDCGINGIDKRRRSEALWFVENETACRDFIQASKKGFTSLTALQAAMKPKAAPKPKADTETPVEPEADDKSNVGLDSEADKADKSPSDIALDALVQCEMNGIAIKDFMLALKEQLEMLDEDKVAA |
| Ga0224906_10101953 | F031294 | AGGAG | MKFEMLDLFLIAMLMVAIFFGLAMLSLYGVGYMTWLSWTMFGCSAWCLICGWGIVAYNLENRNG |
| Ga0224906_10101954 | F017755 | GGAG | MAKRGAIIDMGRHKAVGSSWKAMDTLAFSRSYEPESRPEFRCYVTGQADAMLDTYRKEKDKADALAILDSLL |
| Ga0224906_10101955 | F017047 | GGAG | MNTETDYKDELVQTLWDLFKEVHGVRPRGMGYEKYSVTDLEHEVARLQRSREEEIRHEREMEDRAINACMACGASDIGTAMRWLEDAYEMEWV |
| Ga0224906_10101958 | F037204 | AGGAG | MNIEIYKSLSMYDFAMDVYQKAMHMKHDHNVEHYDVQEIIDYLQFIHNMEKGNAD |
| Ga0224906_10101959 | F012403 | GGAG | MRIKPINPVAKAVAQSRRRTTVVPDKTKYNRKKDKQDANQAGKYEEPKDN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |