Scaffold Ga0224906_1012454

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0224906_1012454

Scaffold Ga0224906_1012454

Overview

Basic Information
Taxon OID	3300022074 Open in IMG/M
Scaffold ID	Ga0224906_1012454 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3244
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054421	Metagenome / Metatranscriptome	140	N
F077797	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_101245410	F077797	AGGAG	MTRRIKFDGGIPCNVTYSNLQSHQKDFSKHTDRERHEKNFRVVSADHINAMETRNYIQAKQYTRDANAIVDAFAWLKDC
Ga0224906_10124542	F054421	AGGAG	MKITRMTSNVADRVREELKIFLSDFVSTHEIEGIKVELGNCSYDEAQATYQLKINVDGVETREQKALKMYAQLDGLDLEKEHPRFKLMEYHPKKRQYPYIYMDKTKPNVRYKGSTDWAIRHFGKVS

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