NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196907_100007

Scaffold Ga0196907_100007


Overview

Basic Information
Taxon OID3300022149 Open in IMG/M
Scaffold IDGa0196907_100007 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9367
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018178Metagenome / Metatranscriptome236Y
F070064Metagenome / Metatranscriptome123Y
F082548Metagenome113Y
F088835Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0196907_10000711F088835N/AMMKEIEPWEYIVANQLNFLSGRVVQLVTEYGVTKDIQVLEEACRDLATLVQRERFIEQRFENADSSD
Ga0196907_10000713F082548GGAGMRSPRAIAQDMVKAMDAAAKKVWDSEPKKESDEKLKALVFAHVCNSYARRGGYGKTEVTD
Ga0196907_10000715F018178GGAGMDRMDAILTKLSERIHEWEGASVEAIEAETTFKSFEAAMQKAHMDSGSSAAKAQTETRSSLDWAGYYKEVQLANLKAEKIKKQIMLGQLMFDAERTKQANQRRIV
Ga0196907_10000718F070064GGAGGMGRVKSELMTDGPDDELVAKPISQIVDNIRNCDLPRNSVERHEYLRNQLKELMDGIKTNT
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