NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212031_1010199

Scaffold Ga0212031_1010199


Overview

Basic Information
Taxon OID3300022176 Open in IMG/M
Scaffold IDGa0212031_1010199 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1317
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006109Metagenome381Y
F017122Metagenome / Metatranscriptome242Y
F022403Metagenome / Metatranscriptome214Y
F043896Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0212031_10101991F022403N/AMLLDEHRYRLAENLAAAEGKRLTAMLREMVYAALEKAVPASDYKAAEAADKAAWAESVQRRVQGRMRSKQEGKVSESDA
Ga0212031_10101992F006109N/AMTRYVVMVDNRWVTAVYGPGNGIGLTAAQDDASSWVTYERAVAAARAVAQCTNSHVAIHSVEEPSYPKSWK
Ga0212031_10101993F017122N/AMEVVPFQNQLDPELRLGEGRSRTSAEHTELFELKIWLPGQGAMRDVVRAESLQQAITFATNRYPNCRVEVPSTAAKKPRLVRSSMGPKEAARKRLKIVEAKREQS
Ga0212031_10101994F043896GGAGGVSNPEIADWARQAWGEVIVDQSRADLIEKLYEWDGRSNPEHPYHHTYTGLYLKYTEN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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