NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196887_1000895

Scaffold Ga0196887_1000895


Overview

Basic Information
Taxon OID3300022178 Open in IMG/M
Scaffold IDGa0196887_1000895 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13471
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F030067Metagenome / Metatranscriptome186N
F071124Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0196887_100089511F001655GAGGMKQPENSHTKHFGNDGPIGNDAEIIVYYEQHGPAEPVLRIPFWYYKDEIGMFEHFEASVHRTAKALKESYTYWPEGYVHVQTIINDEYVNMV
Ga0196887_100089514F071124AGGGGGMTYAEYELGYYTGDSEDYSGPPEDPETQAMLEHLIEYETEMYRLNCKRRLSGCTYKQLRGLLINLHGEDWKDAL
Ga0196887_100089515F030067AGGAGMPRESWEVAHDEYYDDLEAPEQYDRCDIEAWKEEEQKVIDNVIQRLQGVTQ
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